Sample Detail

Basic Information

Manual

Sample ID:

SRR11119465

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

Etoposide

Treatment Time:

3hrs

Treatment Dose:

50uM

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: CTAACGAG ; library: BB191

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.022124

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
rDNA	0	3068	2072	383.412	-
chrUn_gl000220	101159	108491	107495	165.13	-
chr10	109044945	109045679	109045413	125.354	-
chr8	130739838	130740058	130739856	110.326	+
chr12	43480558	43480763	43480558	98.3828	+
chr7	93453137	93453385	93453380	94.5046	-
chr14	49394187	49394746	49394295	85.72	+
chr3	74841938	74842141	74842139	84.278	-
chr3	83275744	83275949	83275946	83.795	-
chr3	12114367	12114573	12114373	76.9737	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr10	109045211	109045450	109045413	254.017	-
chr7	72935094	72935294	72935094	179.521	+
chr9	140405448	140405508	140405496	100.344	+
chr17	48938653	48939079	48938863	82.9809	-
chr2	191045052	191045233	191045214	81.7305	+
chr20	30945177	30945936	30945673	71.5862	+
chr15	35838004	35838349	35838149	69.1798	+
chr14	77735997	77736206	77736163	64.5829	-
chr20	62313766	62314110	62313967	63.8907	-
chr10	119941155	119941408	119941179	59.8603	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download