Sample Detail

Basic Information

Manual

Sample ID:

SRR11119466

Source Project ID:

GSE145594

Cell Type:

Caco-2

Organism:

Homo sapiens

Treatment:

pks+ E.coli infection

Treatment Time:

3hrs

Treatment Dose:

MOI20

Layout:

SINGLE

Instrument model:

Illumina NextSeq 500

Technique:

sBLISS

Others:

barcode: GCTTGTCA ; library: BB192

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr14	91671817	91672022	91672017	184.881	-
chr15	66795407	66795828	66795587	176.33	+
chr4	126114660	126114860	126114660	171.232	+
chrX	80720055	80720258	80720255	162.015	-
chr8	26497712	26497912	26497712	154.004	+
chr1	222773298	222773547	222773345	153.889	+
chr15	94573118	94573372	94573319	150.448	-
chr10	92904893	92905107	92904893	143.929	+
chr17	64581652	64581855	64581852	140.413	-
chr22	26767100	26767342	26767300	132.453	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr15	66795583	66795794	66795587	174.517	+
chr10	109045212	109045437	109045413	171.319	-
chr15	96595370	96595487	96595469	162.517	-
chr14	94546953	94547154	94546954	109.104	+
chr12	66451233	66451466	66451431	101.204	-
chr20	42827577	42827777	42827733	72.3204	-
chr6_mann_hap4	1218615	1218822	1218617	61.7351	+
chr17	45887570	45887971	45887738	60.8979	+
chr19	13263878	13264164	13264053	58.3202	+
chr6	160521615	160521974	160521823	56.7569	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download