DNA Damage Atlas

GSM4322024-Caco-2_pks_minus_E.coli_rep4

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119467


Source Project ID:   

GSE145594

Cell Type:   

Caco-2


Organism:   

Homo sapiens


Treatment:   

pks- E.coli infection


Treatment Time:   

3hrs


Treatment Dose:   

MOI20


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 500


Technique:   

sBLISS


Others:   

barcode: AGCCATCA ; library: BB192


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002924


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr5618012836180167561801473215.255+
chr10967118329671206796712032203.804-
chr9129596543129596769129596543161.877+
chr8837089718370917383708971157.741+
chr14576623195766252457662520156.392-
chr1171539429171539633171539630153.302-
chr5869429728694342786943224144.167+
chr16949076094909609490760141.617+
chr1212901474212901674212901474139.65+
chr5211851272118537221185364136.88-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10109045205109045447109045413151.684-
chr7258913692589157025891468110.284+
rDNA87241102110276108.743+
chr12664512316645159366451431104.612-
rDNA351861754714101.873-
chr1011994115511994140611994117988.8264+
chr417089501709168170895477.1897+
chr115502297315502322815502302775.9887+
chr1185780783857810068578091266.2818-
chr1010602899810602924910602899859.3609+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab