DNA Damage Atlas

GSM4322057_TK6_DMSO_Rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119500


Source Project ID:   

GSE145598

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DMSO


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.023256


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl0002201570661603401589162387.38+
chrUn_gl0002201132181166111149442309.34+
chrUn_gl0002201086531112811103152072.31+
rDNA3486615748952072.11+
chrUn_gl0002201526251552271542922063.3+
rDNA76681308195111286.42+
chrUn_gl000216804798088080711236.997-
chr1010904520910904541710904541396.8013-
chrUn_gl000216905210771958187.1448-
chrUn_gl00021675215765737583369.389-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA91381090395111930.36+
chrUn_gl0002201585071603401589161929.76+
chrUn_gl0002201145291164521149441858.21+
chrUn_gl0002201529961548981542921798.1+
rDNA3605584448951560.51+
chrUn_gl0002201090121112551103151530.07+
chrUn_gl000216804798085380711252.754-
chrUn_gl000216913197879581160.172-
chr10109045209109045417109045413143.183-
chrUn_gl000225134844135243134874104.329+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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