DNA Damage Atlas

GSM4322059_TK6_DMSO_Rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119502


Source Project ID:   

GSE145598

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

DMSO


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220152996154898154292778.194+
rDNA360558444900650.905+
chrUn_gl000220109012111255110320632.842+
rDNA9138109039511618.637+
chrUn_gl000220114529116452114944589.101+
chrUn_gl000220158507160371158916584.153+
chrUn_gl000220157196157899157319481.059+
chrUn_gl000220113227113900113347419.128+
chr10109045209109045418109045414195.914-
chrUn_gl000216913197879583159.512-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA91381090395111930.36+
chrUn_gl0002201585071603401589161929.76+
chrUn_gl0002201145291164521149441858.21+
chrUn_gl0002201529961548981542921798.1+
rDNA3605584449001560.51+
chrUn_gl0002201132271139001133471557.66+
chrUn_gl0002201571961578991573191536.82+
chrUn_gl0002201090121112551103201530.07+
chrUn_gl000216804798085380710252.754-
chrUn_gl000216913197879583160.172-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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