DNA Damage Atlas

GSM4322060_TK6_ETO_Rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119503


Source Project ID:   

GSE145598

Cell Type:   

TK6


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

4hrs


Treatment Dose:   

30uM


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220109013111016110453250.825+
rDNA358458365033224.795+
chrUn_gl000220152723155250154425192.233+
chrUn_gl000220158246160352159687164.458+
chrUn_gl000220114260116372115715163.804+
rDNA88871093210275158.682+
chrUn_gl000220113185113937113347141.18+
rDNA29087315393009947.2711-
chrUn_gl00022012086912811912421738.9506-
chr1010312445010312485610312469538.0491-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000220109013111016110453337.151+
rDNA358458365033307.14+
chrUn_gl000220152724155250154425266.759+
chrUn_gl000220113185113937113347239.825+
chrUn_gl000220158246160352159687234.497+
chrUn_gl000220114260116372115715232.627+
rDNA88871093210275228.512+
chrUn_gl00022811520412051511922237.1826+
chr1010312445210312485610312469531.8501-
chr686353585863542128635397126.54-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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