DNA Damage Atlas

GSM4322062_Enterocyte_Mid_M1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119505


Source Project ID:   

GSE145598

Cell Type:   

Enterocyte


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Others:   

cell markers: Cd73/Nt5e mid


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961180212434119451064.63+
chrX143482864143483497143483075609.93-
chrUn_GL45638998521124810680480.851-
chr10722970377229748472297216163.207+
chr710442753810442824410442799474.0334+
chrUn_GL45639018465197241952172.7456+
chr543101647431020184310178665.5468+
chr114767751214767787314767766464.3006+
chrUn_GL45639017707181261771263.314+
chrUn_GL45638331556323293194258.6283-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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