DNA Damage Atlas

GSM4322064_Enterocyte_Neg_M2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119507


Source Project ID:   

GSE145598

Cell Type:   

Enterocyte


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Others:   

cell markers: Cd73/Nt5e negative


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004695


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482591143483255143483075669.907-
chrUn_GL45638998281130710680319.634-
chrUn_GL456396114191552811950119.52+
chrUn_GL45639018348197251952164.2785+
chrUn_GL45639017551182631771245.4865+
chrUn_GL456370840510243.5651+
chr1344869084448703844486962236.695+
chr912346138012346239512346204635.4716-
chrUn_GL45638331038324743194232.6293-
chr649236014492370364923647428.8134+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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