DNA Damage Atlas

GSM4322065_Enterocyte_Mid_M2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119508


Source Project ID:   

GSE145598

Cell Type:   

Enterocyte


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Others:   

cell markers: Cd73/Nt5e mid


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.006369


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961180012434119501282.85+
chrX143482693143483383143483075942.635-
chrUn_GL45638998521120710680548.77-
chr10722968047229748472297183131.299+
chrUn_GL45639018501198171952190.5274+
chrUn_GL45639017681182071771277.1086+
chrUn_GL45638331390323293194273.8431-
chrUn_GL456370832310268.8415+
chr1410633122610633169210633154968.0782-
chr713038995813039032113039011456.4197+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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