DNA Damage Atlas

GSM4322066_Enterocyte_High_M2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11119509


Source Project ID:   

GSE145598

Cell Type:   

Enterocyte


Organism:   

Mus musculus


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 500


Technique:   

sBLISS


Others:   

cell markers: Cd73/Nt5e high


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.052632


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563961180212213119502177.57+
chrUn_GL4563891022610955106801151.62-
chrX1434828691434835231434830751099.52-
chr10722970397229748372297236545.225+
chr7104427785104428238104428095510.7-
chr5431016494310201843101788292.472+
chrY645339026453425364534040237.823+
chr17908297749083048790830167219.937-
chrY831674298316778583167575209.36+
chr1147677526147677873147677664206.198+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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