DNA Damage Atlas


GSM4338386-GM12878-rep1




Basic Information

Manual

Sample ID:   

SRR11178102


Source Project ID:   

GSE145883

Cell Type:   

GM12878


Organism:   

Homo sapiens


Treatment:   

UVC


Treatment Dose:   

20J/m2


Harvested Time:   

plates were harvested 1 h after irradiation


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr223919737223919761223919744221.4946/
chr2049427687494277704942772716.9508/
chr1184024347840244278402438616.1209/
chr1267835618678357106783566315.2926/
chr714298548014298556814298552314.6554/
chr1268724572687246626872461614.3297/
chr1681514983815151338151503213.2876/
chr697061221970613299706127413.027/
chr1210485683810485700810485694012.414/
chr1165278213652783606527828511.9636/
Download the Full Peak List



Motif Analysis

Manual





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