DNA Damage Atlas

GSM4386809-RkoOxR2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247049


Source Project ID:   

GSE146473

Cell Type:   

RKO


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr74721146472485447225165.26663/
chr81459780661459821731459806615.20399/
chr89930487899307505993061984.75189/
chr177312361273129128731264074.73192/
chr71007274821007350971007307764.66329/
chr113327774433280841332795314.6262/
chr206225554462261924622579534.58027/
chr81459088161459131001459106404.55852/
chr203762180376867837652754.54075/
chr101034531221034563871034543164.47505/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr710516241110516245010516242437.5855/
chr286422307864223588642232637.0862/
rDNA29362980295036.5384/
chr910424873210424876510424875835.8219/
chr1762610257626102956261027732.3529/
chr589705076897051288970510031.8264/
chr262132831621328696213285831.1085/
chr913217622513217630613217624730.9395/
chr352296435229679522966030.2098/
chr414021688714021693814021691129.669/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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