DNA Damage Atlas

GSM4386811-Dld1OxR2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247051


Source Project ID:   

GSE146473

Cell Type:   

DLD-1


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM12315071.6488/
chr1373635199736352357363521649.4169/
chr1846478291464783704647834048.5938/
chrUn_gl00022567264673126728744.8653/
chr270313961703141317031402644.0621/
chr353925818539258765392584643.5873/
chr412340161234107123407743.2148/
chr1687438756874388008743877742.56/
chr1630087161300872013008718042.1344/
chrM25964152541.9138/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022567264673126728744.8653/
chr270313961703141317031402644.0621/
chr353925818539258765392584643.5873/
chr1630087161300872013008718042.1344/
chr511450597211450601711450599341.6142/
rDNA14248143521431741.4141/
chr162247153622471976224717440.432/
chr2035089908350899453508992537.9589/
chr212888285612888289312888287337.9589/
chr1729298475292985552929851337.4528/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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