DNA Damage Atlas

GSM4386812-Sw480OxR1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247052


Source Project ID:   

GSE146473

Cell Type:   

Sw480


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1785597085601385599032.8992/
chr1744269946442699834426996327.3101/
chr634740663474103347408327.3101/
rDNA14247143451431625.7774/
chr744034455440345124403448223.9323/
chr775071510750715537507153023.4994/
chr1779670076796701597967010323.1314/
chr772407225724072717240724723.0652/
chr766050527660505766605055022.6841/
chr1150437869504379075043788722.6027/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1785597285601385599034.504/
chr710047985610047993410047988933.0348/
rDNA14263143451431630.8072/
chrUn_gl00022567264673186728829.94/
chr1734136734341367723413675729.2506/
chr1744269946442699834426996327.3101/
chr634740663474103347408327.3101/
chr1654237554244554242326.7054/
chr1310721961210721965010721963626.5915/
chr710484411510484416810484414325.7385/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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