DNA Damage Atlas

GSM4386813-Sw480OxR2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247053


Source Project ID:   

GSE146473

Cell Type:   

Sw480


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022567260673186728840.1794/
chr2048808879488089384880890736.46/
chr710720391010720397410720394133.6116/
chr514168687414168692514168689833.3919/
chr744034455440345174403448533.2502/
chr141327947413280224132799332.2671/
chrUn_gl00022537761378113778532.2671/
chr772864528728645667286454630.6632/
chr224575709245757502457572830.6057/
rDNA14263143491431630.2244/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022567264673186728843.1556/
chr353925818539258655392584038.1408/
chr744034455440345124403448536.1669/
chr1165679173656792666567921735.6596/
chrUn_gl00022537761378073778535.073/
chr766050527660505766605055334.7548/
chr1475022371750224157502238234.6301/
chr1143702652437026994370267934.3267/
chr710720391010720397410720394133.6116/
rDNA62867664633.6116/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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