DNA Damage Atlas

GSM4386816-Hct116OxR1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247056


Source Project ID:   

GSE146473

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA14293143421431640.1966/
chrUn_gl00022014212914218214215438.4901/
chr285202235852022728520225236.1226/
chr270471252704712867047126835.172/
chr1688666049886660868866606634.2214/
chr710047986010047993410047990634.2214/
chr1760525281605253376052530832.6597/
chr514142982141430231414300132.5984/
chr2243404731434047684340474832.3202/
chr351433943514339805143396032.3202/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA14293143421431640.1966/
chr1474211652742116997421166938.9137/
chrUn_gl00022014212914218214215438.4901/
chr346877440468774914687746537.241/
chr710047986010047993410047990634.2214/
chr1737163093716344371631634.1671/
chr1010564549710564553010564550834.1062/
chr115608450615608461515608453632.9133/
chr1572524082725241257252409632.7181/
chr1760525281605253376052530832.6597/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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