DNA Damage Atlas

GSM4386817-Hct116OxR2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247057


Source Project ID:   

GSE146473

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022014212614218514215431.6681/
chr1269024944690249836902496231.4825/
chr1012630882912630888312630885528.6689/
chr1474211652742116997421167427.2596/
chr1910496871049742104971327.177/
chr1150437867504379095043788726.6917/
chr643021512430215804302154226.6917/
chr346877433468774914687746124.8509/
chr750140445014088501406524.2652/
chr1032048915320490303204895924.1386/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA14293143421431737.0416/
chr1689660535896605838966055536.7011/
chrUn_gl00022014212914218214215435.2532/
chr1150437873504379055043788735.0329/
chr1269024946690249836902496233.1843/
chr2241827731418277874182775332.4114/
chr1010410827410410832510410829831.402/
chr1035379277353793153537928930.9062/
chr1773178423731784897317845330.7359/
chr2236923165369232003692318630.5048/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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