DNA Damage Atlas

GSM4386819-Ls1034OxR2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247059


Source Project ID:   

GSE146473

Cell Type:   

Ls1034


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr8127461693127461739127461715127.964/
chr21443131114431314944313129123.012/
chr8128828381128828662128828452119.526/
chr8127905351127905396127905372111.571/
chr3539258185392587653925846107.459/
chr8128805935128807434128806832106.025/
chr8128888220128888536128888248100.261/
chr812900844512900861012900853596.532/
chr812880850912880909612880897491.4304/
chr812882171512882251512882222391.325/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr21443131114431314944313129123.012/
chr3539258185392587653925846107.459/
chr1632351242323513203235126688.7836/
chr1632356148323561813235616783.9408/
chr1632350628323507193235067476.1002/
chr1632352801323529093235288175.3427/
chr1632351144323511943235116872.7137/
chr262132831621328706213284971.0269/
chr346877438468774904687746369.9171/
chr1211281953611281959011281956267.3275/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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