DNA Damage Atlas

GSM4386821-Ls180OxR2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11247061


Source Project ID:   

GSE146473

Cell Type:   

Ls180


Organism:   

Homo sapiens


Treatment:   

Oxaliplatin


Treatment Time:   

2hrs


Treatment Dose:   

200uM


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 4000


Technique:   

XR-seq


Others:   

antibody: anti-XPG antibody


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr61460555001460576631460563216.95378/
chr113327768033280843332793446.75754/
chr116723014167237377672366446.64499/
chr61570970461571021331570989826.52246/
chr203870843919293887876.48594/
chr21748276191748318971748287736.01002/
chr53217256532176152321743385.99715/
chr71586201401586238891586217935.85735/
chr194638397746391794463889805.85609/
chr31501251991501315871501280315.80293/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr192012331201687920152638.02198/
chr31501251991501296571501280317.88283/
chr109834541698347884983466147.30773/
chr61460555001460576571460563216.97313/
chr61570972551571020801570989826.85523/
chr121323788081323834281323793576.81672/
chr113327768033280843332793446.75754/
chr203870843917153887876.7485/
chr116723023567237377672366446.73244/
chr187484214074845664748446886.57318/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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