DNA Damage Atlas

GSM4412267-WT_OGAP-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11310337


Source Project ID:   

GSE147013

Cell Type:   

RPE1


Organism:   

Homo sapiens


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

OGAP-seq


Others:   

control: GSM4412269-WT_Input_rep1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022667837305702382.1514/
chr1171713773717146487171421973.6805/
chrX47092283470926634709247259.8796/
chr9_gl000199_random15544115628415589851.5617/
chr913520496513520593513520549147.5175/
chr1490429383904300679042977446.9142/
chr9_gl000199_random91038921049187739.1333/
chr9_gl000199_random72732730957291230.5383/
chr123148835923148915723148868129.9764/
chr9_gl000199_random84009849318436829.4252/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00022667837238702394.2484/
chr1171713773717146487171421973.6805/
chrX47092283470926634709247259.8796/
chr9_gl000199_random15548915628415589854.6748/
chr913520496513520588813520549149.9371/
chr1490429412904300679042977448.9914/
chr9_gl000199_random91038921049187739.1333/
chr9_gl000199_random72751730957291232.225/
chr123148835923148915723148868129.9764/
chr9_gl000199_random84009849218436829.7479/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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