DNA Damage Atlas

GSM4412271-NuMA_TDIF-KD_OGAP-seq_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11310341


Source Project ID:   

GSE147013

Cell Type:   

RPE1


Organism:   

Homo sapiens


Genotype:   

NuMA (TDIF)-KD


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

OGAP-seq


Others:   

control: GSM4412273-NuMA_TDIF-KD_Input_rep1


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1171713560717146587171419136.2057/
chr1490429325904300449042978829.3485/
chr913520496313520593013520538621.6269/
chrX47101432471017244710157716.776/
rDNA19085194321925712.4881/
chr985067089850677298506733111.7754/
chrX47092285470929204709247311.5715/
chr123148810623148910623148872811.4928/
chr123148702823148732823148717710.0484/
chrX4710378847104345471041879.47109/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1171713915717146587171419153.251/
chr1490429450904300449042978835.5246/
chr913520496313520591013520538622.0836/
chrX47092327470926584709247321.6298/
chrX47104074471043334710418718.9134/
chrX47101439471017234710157717.2485/
chr123148836323148909923148872815.3593/
chr985067089850677298506733111.7754/
chr123148702823148732023148717710.3237/
chr12314741042314746672314742479.0355/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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