DNA Damage Atlas

GSM4430185-EdU-seq_in_GCPs-LT530_ctrl

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11393697


Source Project ID:   

GSE147409

Cell Type:   

GCPs


Organism:   

Mus musculus


Treatment:   

vehicle


Treatment Time:   

4hrs


Harvested Time:   

Postnatal day 7 cerebellum


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Others:   

control: GSM4430187-EdU-seq_in_GCPs-LT530_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389103261083210675219.989/
chrUn_JH584304103343103915103559150.713/
chrUn_JH584304977499847698198146.697/
chrUn_JH584304106629107034106835140.991/
chrUn_JH584304726237343873174112.319/
chrUn_JH58430490920913879119656.6167/
chrM136560315151.6689/
chrUn_JH58430469449699026965750.5189/
chrUn_JH58430410438210483010462249.0989/
chr930072203007868300772446.9743/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389103671082810675241.463/
chrUn_JH584304980509846298198206.006/
chrUn_JH584304103343103915103559150.713/
chrUn_JH584304106633107034106835142.398/
chrUn_JH584304726667343473174119.193/
chrUn_JH58430410441610473710462267.14/
chr1856303348563035885630348964.8039/
chrUn_JH58430490933913389119664.1867/
chr1587967958879680998796802859.8796/
chr930072633007798300772456.6883/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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