DNA Damage Atlas

GSM4430186-EdU-seq_in_GCPs-LT530_shh

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11393698


Source Project ID:   

GSE147409

Cell Type:   

GCPs


Organism:   

Mus musculus


Treatment:   

Shh


Treatment Time:   

4hrs


Harvested Time:   

Postnatal day 7 cerebellum


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Others:   

control: GSM4430187-EdU-seq_in_GCPs-LT530_input


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM36570241425.7288/
chrUn_JH58430486111862788619310.4198/
chrUn_JH5843049016290627903989.68562/
chr84823426648234474482343538.36592/
chr104883869648838854488387746.47845/
chr195116926051169441511693495.84372/
chr12802092928021224280210034.39509/
chr51746860517469065174687724.07954/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM36570241425.7288/
chr84823426648234474482343538.36592/
chr12802092928021106280210036.93962/
chr104883869648838854488387746.47845/
chr195116926051169422511693496.31848/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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