DNA Damage Atlas


GSM4430186-EdU-seq_in_GCPs-LT530_shh




Basic Information

Manual

Sample ID:   

SRR11393698


Source Project ID:   

GSE147409

Cell Type:   

GCPs


Organism:   

Mus musculus


Treatment:   

Shh


Treatment Time:   

4hrs


Harvested Time:   

Postnatal day 7 cerebellum


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Others:   

control: GSM4430187-EdU-seq_in_GCPs-LT530_input


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM36570241425.7288/
chrUn_JH58430486111862788619310.4198/
chrUn_JH5843049016290627903989.68562/
chr84823426648234474482343538.36592/
chr104883869648838854488387746.47845/
chr195116926051169441511693495.84372/
chr12802092928021224280210034.39509/
chr51746860517469065174687724.07954/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM36570241425.7288/
chr84823426648234474482343538.36592/
chr12802092928021106280210036.93962/
chr104883869648838854488387746.47845/
chr195116926051169422511693496.31848/
Download the Full Merged Peak List



Motif Analysis

Manual





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