DNA Damage Atlas

GSM4430188-EdU-seq_in_GCPs-LT531_ctrl

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR11393700


Source Project ID:   

GSE147409

Cell Type:   

GCPs


Organism:   

Mus musculus


Treatment:   

vehicle


Harvested Time:   

Postnatal day 7 cerebellum


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 4000


Technique:   

EdU-seq


Others:   

control: GSM4430191-EdU-seq_in_GCPs-LT531_input


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482881143483139143483053338.653/
chr9300165730031913002144259.347/
chrUn_GL456389103671082810649190.277/
chrUn_JH584304980509846298170140.401/
chr2110825285110825431110825357132.461/
chr16758729227587314275873067127.15/
chrUn_JH584304106633107034106836124.876/
chrUn_GL456392217552291622169123.741/
chr8482342844823442348234352101.864/
chrUn_JH58430410334210394510352598.5065/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389103671082810649190.277/
chrUn_JH584304980509846298170140.401/
chr2110825290110825431110825357137.158/
chr16758729227587314275873067127.15/
chrUn_JH584304106633107034106836124.876/
chrUn_JH584304103343103915103525103.543/
chr8482342844823442348234352101.864/
chr1951169260511693635116930290.5275/
chrX46468967464690914646902886.3364/
chrUn_JH58430472666734347316378.2423/
Download the Full Merged Peak List


Visualization

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Motif Analysis

Manual





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