Sample Detail

Basic Information

Manual

Sample ID:

SRR11393701

Source Project ID:

GSE147409

Cell Type:

GCPs

Organism:

Mus musculus

Treatment:

Shh

Treatment Time:

4hrs

Harvested Time:

Postnatal day 7 cerebellum

Layout:

PAIRED

Instrument model:

Illumina HiSeq 4000

Technique:

EdU-seq

Others:

control: GSM4430191-EdU-seq_in_GCPs-LT531_input

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr16	75872907	75873182	75873067	39.8144	/
chr2	110825245	110825472	110825357	36.175	/
chrX	46468920	46469137	46469027	30.6827	/
chr9	6106187	6106397	6106291	22.8984	/
chrM	0	6592	4238	18.6408	/
chr19	51169196	51169422	51169308	16.0398	/
chr18	16624058	16624408	16624223	15.6414	/
chr18	16629234	16629932	16629580	14.2554	/
chr8	48234244	48234699	48234352	12.4383	/
chr13	20974927	20975078	20975001	12.2483	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr8	48234266	48234474	48234352	26.1418	/
chr19	51169260	51169422	51169308	22.3765	/
chr1	28020929	28021106	28021005	22.361	/
chr10	48838696	48838854	48838784	21.7724	/
chrM	3	6570	4238	18.7117	/

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download