DNA Damage Atlas

GSM4431520-WT_END-seq

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11403831


Source Project ID:   

GSE147468

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

Mixed background


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.003191


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr155088950250889505/273437/
chr115335176253351765/232929/
chr2156144262156144265/181227/
chr159939343499393437/166755/
chr1125435718125435721/164909/
chr57329285273292855/161543/
chr9121477512121477515/161250/
chr5115632482115632485/159415/
chr1143739618143739621/157732/
chr119467735494677357/154117/
Download the Full Peak List


Visualization

Manual





Copyright © 2023 All Rights Reserved by Wu lab