DNA Damage Atlas

GSM4431521-CC_END-seq

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11403832


Source Project ID:   

GSE147468

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

Mixed background


Genotype:   

Brac1CC


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005404


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/222909/
chr62218703922187042/221103/
chr115335176253351765/216493/
chr2156144262156144265/183334/
chr1870048867004889/182787/
chr74424679644246799/165578/
chr183577209135772094/163061/
chr57329285273292855/162281/
chr119467735494677357/159094/
chr5115632482115632485/153841/
Download the Full Peak List


Visualization

Manual





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