DNA Damage Atlas

GSM4431523-Del11-CC_END-seq

Basic Information Genome Browser Telomere Analysis Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11403834


Source Project ID:   

GSE147468

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

Mixed background


Genotype:   

Brac1CC/Δ11


In-situ Treatment:   

Exo VII + Exo T


Targeted break:   

AsiSI


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.005765


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9121477512121477515/425026/
chr5115632482115632485/353170/
chr115335176253351765/351785/
chr74424679644246799/337055/
chr1143739618143739621/322524/
chr57329285273292855/311721/
chr8106210920106210923/298229/
chr183577209135772094/295993/
chr1870048867004889/293451/
chr119820368398203686/274141/
Download the Full Peak List


Visualization

Manual





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