DNA Damage Atlas


GSM4437272-JH4_parental_IAA_a_rep2




Basic Information

Manual

Sample ID:   

SRR11434967


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571 + IAA


Treatment Time:   

IAA:6hrs + STI-571: 4days + IAA: 3days


Treatment Dose:   

3uM STI-571 + 500uM IAA


Genotype:   

WT, Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

growth protocol: RPMI1640; 15% FBS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113495223113496808113496330329359+
chr12113489561113489833113489563278966+
chr12113451867113452316113452072187797+
chr12113457529113457757113457533159810+
chr12113434674113435112113434875155661+
chr1211347631111347675411347651190177.6+
chr1211346698211346742911346718580531.8+
chr1211346219211346244111346219375539.4+
chr1211348524311348546911348524445722.6+
chr1211359795411359842111359816342590.8+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496133113496808113496330761479+
chr12113489561113489833113489563367616+
chr12113434874113435112113434875202231+
chr12113451878113452316113452072200902+
chr1211360792711360815211360792840405.8+
chr1211349718511349881411349831610558.2+
chr121134332681134341871134334769033.62-
Download the Full Merged Peak List



Motif Analysis

Manual





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