DNA Damage Atlas


GSM4437282-JH4_Ostir_only_NT_a_rep3




Basic Information

Manual

Sample ID:   

SRR11434977


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571


Treatment Time:   

STI-571: 4days


Treatment Dose:   

3uM STI-571


Genotype:   

Ostir1 knock in,Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

growth protocol: RPMI1640; 15% FBS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113451858113452370113452072162416+
chr12113489038113490116113489563148363+
chr12113495221113498830113496330131712+
chr12113457330113457768113457533102743+
chr1211343467511343515611343487598287+
chr1211347631111347673411347651173858.9+
chr1211359793611359846011359816369879.1+
chr1211346219011346244911346219355448.7+
chr1211346697811346741511346718548019+
chr1211347166111347209211347186328715.8+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496126113496720113496330893102+
chr12113489560113489813113489563555124+
chr12113457532113457761113457533168744+
chr12113434757113435094113434875160970+
chr1211359796811359842611359816375249.1+
chr121134328651134341811134338625613.34-
chr121134991951135001981134999884335.3+
Download the Full Merged Peak List



Motif Analysis

Manual





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