DNA Damage Atlas


GSM4437289-JH4_Ostir_only_IAA_b_rep2




Basic Information

Manual

Sample ID:   

SRR11434984


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571 + IAA


Treatment Time:   

IAA:6hrs + STI-571: 4days + IAA: 3days


Treatment Dose:   

3uM STI-571 + 500uM IAA


Genotype:   

Ostir1 knock in,Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

growth protocol: RPMI1640; 15% FBS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113496134113496963113496336640892+
chr12113452075113452321113452078336808+
chr12113476514113476748113476517178915+
chr12113457536113457767113457539176405+
chr12113489566113490127113489569135893+
chr1211346701511346744311346719181701.2+
chr1211343463411343543511343488176658.6+
chr1211346219711346245511346219966763.1+
chr1211347186711347209911347186955168.3+
chr1211359796611359842911359816941767+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496134113496906113496336630618+
chr12113489566113489800113489569445840+
chr12113452075113452304113452078326128+
chr12113434873113435100113434881248104+
chr12113457537113457750113457539154426+
chr12113467184113467404113467191118780+
chr1211346219711346241711346219968355.9+
chr1211347186711347209911347186954788.4+
chr1211359796611359838111359816951477.4+
chr1211348524911348545811348525043439.3+
Download the Full Merged Peak List



Motif Analysis

Manual





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