DNA Damage Atlas


GSM4437292-JH4_Ostir_only_IAA_a_rep4




Basic Information

Manual

Sample ID:   

SRR11434987


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571 + IAA


Treatment Time:   

IAA:6hrs + STI-571: 4days + IAA: 3days


Treatment Dose:   

3uM STI-571 + 500uM IAA


Genotype:   

Ostir1 knock in,Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

growth protocol: RPMI1640; 15% FBS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113451871113452304113452072207288+
chr12113496126113498827113496330185802+
chr12113476509113476757113476511144387+
chr12113434674113435156113434875115206+
chr1211345733211345775811345753390850.5+
chr1211348860611349011211348956385386.8+
chr1211347186011347211111347186367040.2+
chr1211346700911346740411346718560236.7+
chr1211359796211359840111359816351592.8+
chr1211348114211348137211348114440092.4+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496134113496906113496330630618+
chr12113434873113435100113434875248104+
chr12113467184113467404113467185118780+
chr1211359796611359838111359816351477.4+
chr121134332621134341811134338627120.45-
chr121134991921135001951134995085481.26+
Download the Full Merged Peak List



Motif Analysis

Manual





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