DNA Damage Atlas


GSM4437320-JH4_CTCFdegron_NT_a_rep6




Basic Information

Manual

Sample ID:   

SRR11435015


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571


Treatment Time:   

STI-571: 4days


Treatment Dose:   

3uM STI-571


Genotype:   

CTCFdegron, Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

growth protocol: RPMI1640; 15% FBS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113496129113500204113496330159001+
chr12113452069113452397113452072149008+
chr12113457531113457757113457533116980+
chr12113476508113476752113476511113198+
chr1211343465711343546111343487594537.2+
chr1211346718411346751511346718574196.6+
chr1211348904011349011311348956347462.3+
chr1211344939611344964011344939837637.6+
chr1211347186211347210511347186336360.9+
chr1211348524311348546811348524433704+
Download the Full Peak List



Motif Analysis

Manual





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