DNA Damage Atlas

GSM4437323-JH4_BMProB_rep5

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11435018


Source Project ID:   

GSE142777

Cell Type:   

BM pro B cell


Organism:   

Mus musculus


Strain:   

129sv


Treatment:   

Sorted pro-B cells by FACS (B220+CD43+IgM-)


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

growth protocol: None


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113496124113496898113496333239505+
chr12113476314113476758113476514140420+
chr12113489563113490092113489566134945+
chr12113598165113598386113598166123611+
chr12113471863113472242113471866106102+
chr12113451870113452332113452075105168+
chr12113457533113458225113457536104167+
chr1211346698711346774211346718899128.7+
chr1211343465511343512911343487896195.2+
chr1211348094711348138311348114795127.5+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113496133113496600113496333326298+
chr12113476511113476755113476514231374+
chr12113457534113457790113457536230699+
chr12113489563113489846113489566221386+
chr12113452072113452299113452075194110+
chr12113481144113481377113481147188624+
chr12113434876113435114113434878167162+
chr12113471863113472115113471866153840+
chr12113598165113598386113598166150046+
chr12113485244113485475113485247137691+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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