DNA Damage Atlas


GSM4437330-JH4_CTCFdegron_IAA_rep2_offtarget




Basic Information

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Sample ID:   

SRR11435025


Source Project ID:   

GSE142777

Cell Type:   

v-Abl pro-B cell


Organism:   

Mus musculus


Treatment:   

RAG2 nucleofected + STI-571 + IAA


Treatment Time:   

IAA:6hrs + STI-571: 4days + IAA: 3days


Treatment Dose:   

3uM STI-571 + 500uM IAA


Genotype:   

WT, Emu-Bcl2, RAG2 deficient


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

LAM-HTGTS


Others:   

growth protocol: RPMI1640; 15% FBS


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113494300113494517113494310166565+
chr12113224200113224723113224203133613+
chr12113497187113497605113497365109529+
chr1211346068811346090211346069490079.9+
chr1211354522011354554411354522381808.7+
chr1211344699111344759011344699152296+
chr1211347036111347081011347036548300.1+
chr1211438436211438456511438436235610.4+
chr1211347990611348011211347990635091.8+
chr1211579464411579485211579464434754.4+
Download the Full Peak List



Motif Analysis

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