DNA Damage Atlas

GSM4445671-S1-seq_Exo1DA_12dpp_rep2_adaptor_swap_T

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11452801


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

Exo1DA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

S1-seq


Others:   

age: 12 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 196.61556


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA5359051552229.4809-
chrUn_JH5843046473440465006.19159-
chr109758897097600808975963244.49202-
chr185028690650296183502909313.96388+
chr51372623991372696571372655653.7999-
chr188714866987156303871527123.71507+
chr59142274191434681914255963.58305-
chr85334522453356022533499533.55021+
chr144883688648846647488409693.45955+
chr41372125711372257181372202333.3775-
Download the Full Peak List


Visualization

Manual





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