DNA Damage Atlas

GSM4445672-ExoT-seq_Dmc1_null_16dpp_rep1_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11452802


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J + 129S1/SvImJ (mixed)


Genotype:   

Dmc-/-


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ExoT-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001633


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0323972586937.6399-
chr912378568412381321412379802012.4675-
chr1189597721896258358960997110.9537-
chr76029917605375360412478.73937-
chr61405783561406042881405932128.65652+
chr98310806383136874831241548.54222+
chr83655740136584751365731287.6549+
chrUn_JH5843045873401206107.15356+
chr91239227471239422551239255837.08834-
chr139537896995404984953905836.79254-
Download the Full Peak List


Visualization

Manual





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