DNA Damage Atlas

GSM4445673-ExoT-seq_wt_16dpp_rep2_adaptor_swap_F

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization


Basic Information

Manual

Sample ID:   

SRR11452803


Source Project ID:   

GSE141850

Cell Type:   

Testis


Organism:   

Mus musculus


Strain:   

C57BL/6J


Genotype:   

WT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

ExoT-seq


Others:   

age: 16 days post partum


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.000935


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA0324302603141.7133-
chrM411227648917.8464+
chr101055718071055858371055799847.32044+
chrUn_JH5843041084396294376.2436+
chr87142716971434973714331685.69949-
chr91150930771151063061151013544.11108+
chr31435825681435952591435908654.03047+
chr153494468434956421349506423.94466+
chrX1665327361665428731665354033.92905-
chr98311593783129293831210823.7541-
Download the Full Peak List


Visualization

Manual





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