DNA Damage Atlas

GSM4459993-N641MR2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11510188


Source Project ID:   

GSE148303

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UVC (250 nm) + incubated 1 min


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM5272554853511019.64/
chrM617267376239877.446/
chrM01067488854.633/
chrM123739632425800.671/
chr246325033463250754632505360.2232/
chr1719350596193506371935061556.3275/
chr210209100310209104110209102154.9864/
chr441214831412148714121485054.9864/
chr1051572608515726435157262453.4153/
chr813439543313439547713439545452.487/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM5276554553511046.17/
chrM196839592425935.68/
chrM617267376239877.446/
chrM11066488856.238/
chr2243144408431444444314441567.2056/
chr115152903151529621515292967.102/
chr1454914035549140765491405567.0565/
chr217237877917237882617237880863.1758/
chr2017824164178242051782418061.692/
chr1719350596193506341935061560.7744/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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