DNA Damage Atlas

GSM4459994-N642MR1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11510189


Source Project ID:   

GSE148303

Cell Type:   

NHF1


Organism:   

Homo sapiens


Treatment:   

UVC (250 nm) + incubated 2 mins


Treatment Time:   

20s


Treatment Dose:   

1J/m2/s


Layout:   

SINGLE


Instrument model:   

illumina HiSeq 4000


Technique:   

XR-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM46515563536715.3119/
chrM19314190365513.2412/
chrM1107250111.6206/
chr176306805363068281630681629.80704/
rDNA1398214378142329.48182/
chr11733812161733815501733813759.47353/
chr22036637120366729203664749.07412/
chr21740972174129317411018.93718/
chr193563193035632169356320718.8261/
chr12308690823087596230871328.58492/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM19314190365513.2412/
chr216500821716500831416500828612.1782/
chr1935631992356321593563207112.1261/
chrM1107250111.6206/
chr1833932435339327223393258911.3189/
chr1763068061630682656306816210.9608/
chr135914994359153063591507810.9529/
chr315848800815848824615848816510.8131/
chr644458178444583054445824410.6302/
chr362553104625532356255316310.6277/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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