DNA Damage Atlas

GSM4498734-U2OS_M_phase_plus_Aphidicolin_negative_control_1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11612548


Source Project ID:   

GSE149373

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.3uM


Cell Phase:   

M


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199540.808/
chr117300220017300239917300229931.6231/
chr120740000020740019920740009931.6231/
chr1423519600235197992351969931.6231/
chr285729800857299998572989931.6231/
chr533210003321199332109931.6231/
chr911089020011089039911089029931.6231/
chr1127788600277887992778869925.2984/
chr161389200613893996138929925.2984/
chr741480004148199414809925.2984/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199540.808/
chr986615800866177998661679915.7403/
rDNA22600237992359914.6959/
rDNA16001999179912.6175/
rDNA28400293992889912.5986/
rDNA31200325993189911.6953/
chr81184732001184739991184735996.30087/
rDNA1280015399146995.32689/
chr43047360030474599304740995.03943/
chr47302440073025399730248995.03943/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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