DNA Damage Atlas

GSM4498735-U2OS_M_phase_plus_Aphidicolin_negative_control_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11612549


Source Project ID:   

GSE149373

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.3uM


Cell Phase:   

M


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199399.041/
chr986615800866177998661679987.787/
chr434177800341779993417789936.5259/
chr1116930000169301991693009920.872/
chr1211462340011462359911462349920.872/
chr1611439400114395991143949920.872/
chr317539680017539699917539689920.872/
chr888001600880017998800169920.872/
rDNA31000325993179919.4818/
chr674229800742309997423039914.7227/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199399.041/
chr986615800866177998661679987.787/
rDNA31200325993179922.2669/
chr674229800742309997423039914.7227/
rDNA28400293992889914.5519/
rDNA12800153991409912.785/
rDNA16200169991659911.6964/
rDNA2260023799231998.66038/
chr104708920047090199470897996.23652/
chr62818520028186399281855994.33019/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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