DNA Damage Atlas


GSM4498735-U2OS_M_phase_plus_Aphidicolin_negative_control_2




Basic Information

Manual

Sample ID:   

SRR11612549


Source Project ID:   

GSE149373

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.3uM


Cell Phase:   

M


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

MiDAS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199399.041/
chr986615800866177998661679987.787/
chr434177800341779993417789936.5259/
chr1116930000169301991693009920.872/
chr1211462340011462359911462349920.872/
chr1611439400114395991143949920.872/
chr317539680017539699917539689920.872/
chr888001600880017998800169920.872/
rDNA31000325993179919.4818/
chr674229800742309997423039914.7227/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199399.041/
chr986615800866177998661679987.787/
rDNA31200325993179922.2669/
chr674229800742309997423039914.7227/
rDNA28400293992889914.5519/
rDNA12800153991409912.785/
rDNA16200169991659911.6964/
rDNA2260023799231998.66038/
chr104708920047090199470897996.23652/
chr62818520028186399281855994.33019/
Download the Full Merged Peak List



Motif Analysis

Manual





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