DNA Damage Atlas

GSM4498737-U2OS_M_phase_plus_Aphidicolin_replicate_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11612551


Source Project ID:   

GSE149373

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.3uM


Cell Phase:   

M


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM01639981994467.69/
chr1447293600480987994769619910.2248/
rDNA31000325993179910.2136/
chr92888560029251399290684999.86262/
chr108391560084466599841910999.77686/
chr92835340028884799286190999.16937/
rDNA2800028799283998.98658/
chr142751740027928999277231998.65537/
chr51038602001044139991041370998.33529/
chr17198540072354199721697997.67264/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM01639981999931.76
chr928885800291885992906849913.709
chr1083915600844665998419109913.422
chr928353400287609992861909912.6502
chr1447293600480875994769619912.2408
rDNA31200325993179911.6913
rDNA28000287992839911.6497
rDNA23200237992349911.2912
chr1427538400279289992772319910.2626
chr17203520072353999721697999.55316
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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