DNA Damage Atlas

GSM4498738-U2OS_M_phase_plus_Aphidicolin_replicate_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11612552


Source Project ID:   

GSE149373

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.3uM


Cell Phase:   

M


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM016399819916332.5/
chr1083893000844803998418669916.8972/
chr1447278800480875994768319915.6623/
chr928353200292613992880729914.994/
chr1427538400279289992773369912.8808/
chr171985200723541997216969911.9359/
chr510386020010442439910414229911.7636/
rDNA31200325993189911.1437/
chr711035300011088279911061789910.7887/
chr2014377800148425991461019910.5915/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM01639981999931.76
chr1083915600844665998418669913.422
chr1447293600480875994768319912.2408
rDNA31200325993189911.6913
rDNA28000287992809911.6497
chr1427538400279289992773369910.2626
chr17203520072353999721696999.55316
chr71104710001108689991106178999.10788
chr51040588001044139991041422999.10702
chr201440480014812199146101998.542
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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