DNA Damage Atlas

GSM4498740-U2OS_S_phase_plus_Aphidicolin_negative_control

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11612554


Source Project ID:   

GSE149373

Cell Type:   

U2OS


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Time:   

18hrs


Treatment Dose:   

0.3uM


Cell Phase:   

S


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199435.278/
chr814494040014494059914494049920.4946/
rDNA40079959920.4432/
chr2058135400581355995813549914.639/
chr2227351800273519992735189914.639/
rDNA12400153991389912.0451/
rDNA27200287992799912.0243/
chr1022639800226399992263989911.7112/
chr1033316600333167993331669911.7112/
chr1043347400433475994334749911.7112/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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