DNA Damage Atlas

GSM4498743-HeLa_M_phase_plus_Aphidicolin_negative_control

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR11612557


Source Project ID:   

GSE149373

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Dose:   

0.3uM


Cell Phase:   

M


Layout:   

PAIRED


Instrument model:   

HiSeq X Ten


Technique:   

MiDAS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM0163998199505.297/
rDNA40079959917.5924/
rDNA31000325993179913.9012/
rDNA28200293992879913.6602/
chr536874800368749993687489911.7577/
chr544900004490199449009911.7577/
rDNA36003799369911.7577/
rDNA16002199189911.7185/
rDNA12600147991369910.9949/
chr51470820014708399147082999.79811/
Download the Full Peak List


Visualization

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Motif Analysis

Manual





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