Sample Detail

Basic Information

Manual

Sample ID:

SRR11680385

Source Project ID:

GSE149706

Cell Type:

KM12

Organism:

Homo sapiens

Treatment:

Doxycycline

Treatment Time:

72hrs

Genotype:

Dox inducible shWRN

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM4509217-ENDseq-KM12-NT-rep1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.000318

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729871	37730189	37730071	147.279	-
chr1	151764962	151765490	151764999	41.652	+
chr7	151986567	151987778	151987283	39.3682	-
chr14	31808426	31808627	31808627	35.3768	-
chrX	34035863	34036082	34036064	34.2501	-
chr6	11697539	11703901	11700650	28.0271	-
chr8	139448514	139456676	139454468	23.1585	-
chr4	28034198	28052371	28043386	22.3178	-
chr2	226966825	226973307	226969610	22.0186	+
chr20	40899665	40912587	40905122	21.9602	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729871	37730072	37730071	171.389	-
chr1	115081198	115081202	115081202	93.7348	-
chr1	61966499	61966503	61966499	52.4806	+
chr8	64912894	64912903	64912894	34.5841	+
chr14	31808426	31808627	31808627	34.0531	-
chr7	151986567	151987778	151987283	30.8548	-
chr17	29310123	29310132	29310132	29.5836	-
chr1	151764962	151765490	151764999	29.4796	+
chrX	34035863	34036082	34036064	28.9665	-
chr6_cox_hap2	708819	709019	709019	24.7724	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download