Sample Detail

Basic Information

Manual

Sample ID:

SRR11680387

Source Project ID:

GSE149706

Cell Type:

KM12

Organism:

Homo sapiens

Treatment:

Doxycycline

Treatment Time:

72hrs

Genotype:

Dox inducible shWRN

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM4509219-ENDseq-KM12-NT-rep2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.00033

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729698	37730072	37730071	59.1332	-
chr20	40901024	40913371	40905122	17.1536	-
chr6_cox_hap2	708818	709019	709019	15.862	-
chr3	157809983	157820281	157814677	15.4125	-
chr10	47138642	47152015	47147680	15.1878	-
chr20	48590112	48599573	48594934	14.9605	-
chr2	214503688	214512019	214508140	14.7959	+
chr7	114850587	114861581	114854620	14.7921	-
chr6	69523882	69532217	69527261	14.743	+
chr8	108210423	108225014	108217228	14.6971	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrX	37729871	37730072	37730071	171.389	-
chr14	31808426	31808627	31808627	34.0531	-
chr7	151986567	151987778	151987283	30.8548	-
chr1	151764962	151765490	151764999	29.4796	+
chrX	34035863	34036082	34036064	28.9665	-
chr6_cox_hap2	708819	709019	709019	24.7724	-
chr6	11697539	11703901	11700650	22.8595	-
chr20	40901024	40912587	40905122	21.2046	-
chrUn_gl000217	146011	146703	146223	20.7716	-
chr2	98282204	98283227	98282236	19.8818	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download