Sample Detail

Basic Information

Manual

Sample ID:

SRR11680389

Source Project ID:

GSE149706

Cell Type:

HCT116

Organism:

Homo sapiens

Treatment:

Doxycycline

Treatment Time:

72hrs

Genotype:

Dox inducible shWRN

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM4509221-ENDseq-HCT116-NT-rep1

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.00083

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr3	101760893	101761180	101761178	19.4576	-
chr4	33658971	33661582	33660847	11.5097	-
chr8	136994342	137001006	136997669	10.9543	-
chr13	90134863	90138729	90136490	10.4836	-
chrUn_gl000225	85430	86297	85633	10.4583	+
chrX	37729871	37730312	37730071	9.52981	-
chr10	110378349	110384101	110381957	9.39324	-
chr13	105043042	105049248	105046277	8.92408	+
chr17	69679542	69686533	69681577	8.83198	+
chrX	7466154	7466572	7466166	8.60803	+

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr5	50852347	50852349	50852347	182.829	+
chr1	100577929	100577931	100577929	145.379	+
chr3	26752920	26752933	26752933	28.5695	-
chr17	60325342	60325355	60325355	25.9134	-
chr16	67654885	67654902	67654902	22.1871	-
chr19	37748341	37748355	37748341	20.5657	+
chrX	92449779	92449801	92449779	20.1561	+
chr1	20878815	20878833	20878833	19.1958	-
chr14	47239337	47239351	47239351	18.5096	-
chr15	100698391	100698412	100698391	16.7254	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download