Sample Detail

Basic Information

Manual

Sample ID:

SRR11680391

Source Project ID:

GSE149706

Cell Type:

HCT116

Organism:

Homo sapiens

Treatment:

Doxycycline

Treatment Time:

72hrs

Genotype:

Dox inducible shWRN

In-situ Treatment:

Exo VII + Exo T

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM4509223-ENDseq-HCT116-NT-rep2

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.001116

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chrUn_gl000214	63856	66030	65066	34.3928	+
chr22	43560135	43560335	43560135	10.2535	+
chr6	11700176	11701264	11700650	9.95362	-
chr3	186259211	186259411	186259211	9.67746	+
chrX	77959103	77959814	77959406	8.58793	+
chr8	136993241	137001098	136998299	7.63654	+
chr8	15159085	15166619	15161698	6.84458	-
chr1	238219741	238223036	238220091	6.46842	+
chr8	29605127	29609555	29606914	6.38483	+
chr1	104837659	104841492	104840071	6.36003	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr11	48617130	48617131	48617130	236.126	+
chr4	46757871	46757873	46757871	77.7571	+
chr13	81015918	81015924	81015918	47.9866	+
chr8	74510079	74510092	74510092	33.0031	-
chr3	26752920	26752933	26752920	28.5695	+
chr2	18818374	18818383	18818374	25.2752	+
chr16	67654885	67654902	67654885	22.1871	+
chr6	34131781	34131802	34131800	21.938	-
chrX	92449779	92449801	92449782	20.1561	-
chr1	20878815	20878833	20878815	19.1958	+

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download